genome sequencing

Deliverable 2.2 – Part B: Genome Analysis of pathogens

The objective of Task 2.3 was to submit the isolates collected in the artisanal foods investigated in the project to whole genome sequencing (WGS) to map each isolate to a strain level; and investigate their pathogenic, virulence and antibiotic resistance properties. All sequenced genomes will be made publicly available in databases, as ENA-EBI, NCBI, Enterobase, to be used to improve global surveillance of foodborne pathogens.